Zymobacter palmae strain IAM14233

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Zymobacter

Description

Zymobacter palmae strain IAM14233 is a notable bacterium characterized by its unique habitat and host associations. This strain is primarily found in the rhizomes of plants, which are underground stems that serve as storage organs and play a crucial role in the vegetative reproduction of certain species. One of the key hosts for Zymobacter palmae is Zingiber officinale, commonly known as ginger. This association highlights the strain's ecological relevance and potential impact on the health and growth of ginger plants. Zymobacter palmae has a simple genomic structure with only one replicon, which may contribute to its adaptability in specific ecological niches. The strain is cataloged under the accession NZ_AP018933.1, providing a reference point for further research and characterization. The interaction between Zymobacter palmae and Zingiber officinale suggests a potential role in the rhizome's microbiome, possibly influencing nutrient cycling or plant health. Understanding the dynamics of such microbial associations can provide insights into the ecological balance within plant systems and may have implications for agricultural practices, particularly in enhancing the growth or resistance of ginger crops. The study of Zymobacter palmae could therefore contribute to broader research on plant-microbe interactions and the ecological roles of bacteria in terrestrial habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusZymobacter
SpeciesZymobacter palmae
Strainstrain IAM14233

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zingiber officinale
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zymobacter palmae strain IAM14233 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2481 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome biogenesis factor yjgaZBT109_RS10485Not AvailablePositive2348218 - 234873920031.1
formate--tetrahydrofolate ligaseZBT109_RS10490Not AvailableNegative2348897 - 235056759719.2
metalloprotease tlddZBT109_RS10495Not AvailableNegative2350779 - 235224551206.7
yhdp family proteinZBT109_RS10500Not AvailableNegative2352283 - 2356176141211.0
ribonuclease gZBT109_RS10505Not AvailableNegative2356181 - 235764455232.8
maf family proteinZBT109_RS10510Not AvailableNegative2357820 - 235840420615.0
rod shape-determining protein mredZBT109_RS10515Not AvailableNegative2358429 - 235891418570.8
rod shape-determining protein mrecZBT109_RS10520Not AvailableNegative2358904 - 235985734686.1
rod shape-determining proteinZBT109_RS10525Not AvailableNegative2360011 - 236104836955.6
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcZBT109_RS10530Not AvailablePositive2361305 - 236159210327.1

Displaying genes 2171 – 2180 of 2691 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.