Zymobacter palmae strain IAM14233

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Zymobacter

Description

Zymobacter palmae strain IAM14233 is a notable bacterium characterized by its unique habitat and host associations. This strain is primarily found in the rhizomes of plants, which are underground stems that serve as storage organs and play a crucial role in the vegetative reproduction of certain species. One of the key hosts for Zymobacter palmae is Zingiber officinale, commonly known as ginger. This association highlights the strain's ecological relevance and potential impact on the health and growth of ginger plants. Zymobacter palmae has a simple genomic structure with only one replicon, which may contribute to its adaptability in specific ecological niches. The strain is cataloged under the accession NZ_AP018933.1, providing a reference point for further research and characterization. The interaction between Zymobacter palmae and Zingiber officinale suggests a potential role in the rhizome's microbiome, possibly influencing nutrient cycling or plant health. Understanding the dynamics of such microbial associations can provide insights into the ecological balance within plant systems and may have implications for agricultural practices, particularly in enhancing the growth or resistance of ginger crops. The study of Zymobacter palmae could therefore contribute to broader research on plant-microbe interactions and the ecological roles of bacteria in terrestrial habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusZymobacter
SpeciesZymobacter palmae
Strainstrain IAM14233

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zingiber officinale
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zymobacter palmae strain IAM14233 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2481 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinZBT109_RS09490Not AvailableNegative2122892 - 212335016502.7
do family serine endopeptidaseZBT109_RS09495Not AvailableNegative2123589 - 212504650850.1
sigma-e factor negative regulatory proteinZBT109_RS09500Not AvailableNegative2125470 - 212615624431.4
rna polymerase sigma factor rpoeZBT109_RS09505Not AvailableNegative2126666 - 212726522500.6
3-deoxy-7-phosphoheptulonate synthaseZBT109_RS09510Not AvailablePositive2127795 - 212886538503.7
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseZBT109_RS09515Not AvailableNegative2129258 - 213098259947.9
phosphomethylpyrimidine synthase thicZBT109_RS09520Not AvailableNegative2130989 - 213280667547.3
hypothetical proteinZBT109_RS09525Not AvailableNegative2133240 - 213356312595.8
phospholipase effector tle1 domain-containing proteinZBT109_RS09530Not AvailableNegative2133668 - 213554270582.7
duf3304 domain-containing proteinZBT109_RS09535Not AvailableNegative2135551 - 213634530896.1

Displaying genes 1971 – 1980 of 2691 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.