Ferriphaselus amnicola strain OYT1

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Ferriphaselus

Description

Ferriphaselus amnicola strain OYT1 is characterized as a microaerophilic bacterium, indicating that it requires low levels of oxygen for optimal growth. This trait is significant as it suggests the organism may inhabit environments where oxygen is present at reduced concentrations, such as in certain aquatic systems or sediments. The strain OYT1 possesses a single replicon, which is noteworthy as it may reflect a streamlined genomic structure that could be advantageous for its survival in specific ecological niches. The genome of Ferriphaselus amnicola strain OYT1 is indexed under the accession number NZ_AP018738.1, facilitating further research and exploration of its genetic and functional attributes. Understanding the ecological role of Ferriphaselus amnicola strain OYT1 is essential, particularly in the context of its microaerophilic nature. This trait may enable the bacterium to engage in unique metabolic processes that contribute to nutrient cycling in its habitat. Microaerophiles often participate in the degradation of organic materials and play a role in the biogeochemical transformations of elements such as carbon and nitrogen. Thus, Ferriphaselus amnicola strain OYT1 likely contributes to the maintenance of ecosystem health and stability by facilitating these processes in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyGallionellaceae
GenusFerriphaselus
SpeciesFerriphaselus amnicola
Strainstrain OYT1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ferriphaselus amnicola strain OYT1 chromosome, complete genome.

Gene Summary

Adenine Count

602794 bp

Thymine Count

595541 bp

Guanine Count

755062 bp

Cytosine Count

763832 bp

Genome Length

2717229 bp

Protein-coding Genes

2559 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-ketoacid dehydrogenase subunit betaOYT1_RS01840P27746Negative402488 - 40354938243.6
thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alphaOYT1_RS01845Q654V6Negative403542 - 40449234182.8
glycosyltransferase family 9 proteinOYT1_RS01850Not AvailableNegative404493 - 40546135814.9
radical sam proteinOYT1_RS01855Not AvailableNegative405454 - 40662344019.8
lipopolysaccharide assembly protein lapbOYT1_RS01860Not AvailableNegative406674 - 40868675724.1
wbqc family proteinOYT1_RS01865P9WLW4Negative408725 - 40940826384.8
degt/dnrj/eryc1/strs aminotransferase family proteinOYT1_RS01870Q9XCW4Negative409440 - 41054641272.6
histidinol-phosphate transaminaseOYT1_RS01875Q2YAU6Positive410970 - 41206439882.6
imidazoleglycerol-phosphate dehydratase hisbOYT1_RS01880C1DAK1Positive412074 - 41266121193.5
imidazole glycerol phosphate synthase subunit hishOYT1_RS01885Q47AM1Positive412666 - 41330123219.9

Displaying genes 521 – 530 of 2701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

127 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 127 metabolites

Health Effects

No health effects information available for this bacterium.