Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein tran | SAMIE_RS21770 | Not Available | Negative | 79432 - 81225 | 64157.0 |
| type-f conjugative transfer system pilin assembly protein trbc | SAMIE_RS21775 | Not Available | Negative | 81264 - 82010 | 26181.1 |
| conjugal transfer pilus assembly protein trau | SAMIE_RS21780 | Not Available | Negative | 82023 - 83042 | 36889.0 |
| hypothetical protein | SAMIE_RS21785 | Not Available | Negative | 83042 - 83311 | 9693.22 |
| type-f conjugative transfer system protein traw | SAMIE_RS21790 | Not Available | Negative | 83311 - 83898 | 21612.9 |
| s26 family signal peptidase | SAMIE_RS21795 | Not Available | Negative | 83964 - 84500 | 19397.6 |
| trbi f-type domain-containing protein | SAMIE_RS21800 | Not Available | Negative | 84481 - 85155 | 23574.5 |
| hypothetical protein | SAMIE_RS21805 | Not Available | Negative | 85148 - 85507 | 13276.3 |
| type iv secretion system protein trac | SAMIE_RS21810 | Not Available | Negative | 85513 - 88104 | 95781.5 |
| trav family lipoprotein | SAMIE_RS21815 | Not Available | Negative | 88106 - 89101 | 33811.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

