Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor domain-containing protein | SAMIE_RS22685 | Not Available | Positive | 41467 - 42003 | 19005.3 |
| is1380 family transposase | SAMIE_RS22690 | Not Available | Negative | 42483 - 43832 | 49340.4 |
| tyrosine-type recombinase/integrase | SAMIE_RS22695 | Not Available | Positive | 44176 - 44808 | 23913.0 |
| hypothetical protein | SAMIE_RS23210 | Not Available | Negative | 44963 - 45262 | 11373.8 |
| ycii family protein | SAMIE_RS22700 | Not Available | Positive | 45431 - 45733 | 11264.6 |
| pirin family protein | SAMIE_RS22705 | Not Available | Negative | 45798 - 46697 | 33097.1 |
| nad(p)h:quinone oxidoreductase | SAMIE_RS22710 | Not Available | Positive | 47000 - 47599 | 20807.7 |
| recombinase family protein | SAMIE_RS22715 | Not Available | Positive | 47657 - 48214 | 19497.1 |
| is6-like element is6100 family transposase | SAMIE_RS22720 | Not Available | Negative | 48283 - 49047 | 29684.0 |
| recombinase family protein | SAMIE_RS22730 | Not Available | Negative | 49110 - 49649 | 19456.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

