Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxyquinol 1,2-dioxygenase | SAMIE_RS22625 | Not Available | Positive | 32317 - 33342 | 38200.9 |
| outer membrane beta-barrel protein | SAMIE_RS24025 | Not Available | Positive | 33407 - 34540 | 39811.0 |
| outer membrane beta-barrel protein | SAMIE_RS24030 | Not Available | Positive | 34449 - 34793 | 12752.9 |
| aldehyde dehydrogenase family protein | SAMIE_RS22640 | Not Available | Positive | 34840 - 36303 | 52289.0 |
| maleylacetate reductase | SAMIE_RS22645 | Not Available | Positive | 36309 - 37367 | 37075.4 |
| dioxygenase | SAMIE_RS22650 | Not Available | Positive | 37364 - 38191 | 29727.4 |
| rieske (2fe-2s) protein | SAMIE_RS22655 | Not Available | Positive | 38198 - 38593 | 15027.0 |
| ycei family protein | SAMIE_RS22660 | Not Available | Negative | 39186 - 39767 | 20502.4 |
| cytochrome b | SAMIE_RS22665 | Not Available | Negative | 39772 - 40362 | 21696.2 |
| is6-like element is6100 family transposase | SAMIE_RS22675 | Not Available | Positive | 40575 - 41339 | 29684.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

