Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | SAMIE_RS22525 | Not Available | Negative | 12476 - 13078 | 22002.4 |
| tn3 family transposase | SAMIE_RS22530 | Not Available | Positive | 13279 - 16248 | 109666.0 |
| acyl-coa dehydrogenase family protein | SAMIE_RS22535 | Not Available | Negative | 16161 - 16877 | 26059.7 |
| cytochrome c oxidase subunit iv family protein | SAMIE_RS22540 | Not Available | Negative | 17012 - 17284 | 10290.1 |
| cytochrome c oxidase subunit 3 | SAMIE_RS22545 | Not Available | Negative | 17297 - 17890 | 22092.1 |
| hypothetical protein | SAMIE_RS22550 | Not Available | Negative | 17937 - 18620 | 25760.9 |
| transposase | SAMIE_RS22555 | Not Available | Positive | 18873 - 19286 | 14881.0 |
| is66 family insertion sequence element accessory protein tnpb | SAMIE_RS22560 | Not Available | Positive | 19283 - 19654 | 13803.7 |
| is66 family transposase | SAMIE_RS22565 | Not Available | Positive | 19949 - 21442 | 55747.6 |
| helix-turn-helix domain-containing protein | SAMIE_RS22570 | Not Available | Positive | 21481 - 21795 | 11663.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

