Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretory system conjugative dna transfer family protein | SAMIE_RS22475 | Not Available | Negative | 981 - 2624 | 59243.1 |
| recombinase family protein | SAMIE_RS22480 | Not Available | Negative | 2791 - 3432 | 23644.2 |
| tn3 family transposase | SAMIE_RS22485 | Not Available | Positive | 3555 - 6464 | 109016.0 |
| recombinase family protein | SAMIE_RS22490 | Not Available | Positive | 6607 - 7473 | 32170.6 |
| recombinase family protein | SAMIE_RS22495 | Not Available | Negative | 7524 - 7682 | 5589.97 |
| is21 family transposase | SAMIE_RS22500 | Not Available | Negative | 7672 - 9195 | 58315.1 |
| mfs transporter | SAMIE_RS22505 | Not Available | Positive | 9501 - 10751 | 43697.5 |
| acyl-coa dehydrogenase family protein | SAMIE_RS22510 | Not Available | Negative | 11122 - 11727 | 22068.5 |
| xre family transcriptional regulator | SAMIE_RS22515 | Not Available | Negative | 11811 - 12095 | 10599.0 |
| type ii toxin-antitoxin system rele/pare family toxin | SAMIE_RS22520 | Not Available | Negative | 12088 - 12444 | 13323.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

