Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretory system conjugative dna transfer family protein | SAMIE_RS22790 | Not Available | Negative | 3490 - 5148 | 59778.9 |
| hypothetical protein | SAMIE_RS22795 | Not Available | Negative | 5151 - 5432 | 10203.3 |
| conjugal transfer protein trad | SAMIE_RS22800 | Not Available | Negative | 5429 - 5647 | 7888.37 |
| conjugal transfer protein trad | SAMIE_RS22805 | Not Available | Negative | 5685 - 5987 | 10540.5 |
| ti-type conjugative transfer relaxase traa | SAMIE_RS22810 | Not Available | Positive | 6160 - 9321 | 115825.0 |
| duf6118 family protein | SAMIE_RS22815 | Not Available | Positive | 9348 - 10046 | 25551.4 |
| tn3 family transposase | SAMIE_RS23940 | Not Available | Positive | 10316 - 10900 | 21524.1 |
| ygjv family protein | SAMIE_RS22825 | Not Available | Negative | 11132 - 11686 | 19662.7 |
| flagellar hook-basal body complex protein flie | SAMIE_RS22830 | Not Available | Negative | 12002 - 12355 | 12655.0 |
| hypothetical protein | SAMIE_RS22835 | Not Available | Negative | 12522 - 12956 | 15160.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

