Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ardc family protein | SAMIE_RS21150 | Not Available | Negative | 165892 - 166497 | 22628.4 |
| hypothetical protein | SAMIE_RS21155 | Not Available | Negative | 166601 - 167065 | 16735.8 |
| integrase | SAMIE_RS21160 | Not Available | Negative | 167049 - 168851 | 67876.2 |
| site-specific integrase | SAMIE_RS21165 | Not Available | Negative | 168856 - 170673 | 67929.5 |
| tyrosine-type recombinase/integrase | SAMIE_RS21170 | Not Available | Negative | 170666 - 171808 | 42929.9 |
| tir domain-containing protein | SAMIE_RS21175 | Not Available | Positive | 172012 - 172500 | 18702.0 |
| toll/interleukin-1 receptor domain-containing protein | SAMIE_RS21180 | Not Available | Positive | 172506 - 173666 | 42779.1 |
| hypothetical protein | SAMIE_RS21185 | Not Available | Positive | 173669 - 174325 | 24533.2 |
| toll/interleukin-1 receptor domain-containing protein | SAMIE_RS21190 | Not Available | Negative | 174342 - 174896 | 20811.7 |
| tir domain-containing protein | SAMIE_RS21195 | Not Available | Negative | 174946 - 175443 | 18149.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

