Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | SAMIE_RS20905 | Not Available | Negative | 115915 - 116781 | 32170.6 |
| tn3 family transposase | SAMIE_RS20910 | Not Available | Negative | 116924 - 119833 | 109016.0 |
| trypsin-like peptidase domain-containing protein | SAMIE_RS20915 | Not Available | Negative | 119846 - 120535 | 23968.4 |
| nadh dehydrogenase ubiquinone fe-s protein 4 | SAMIE_RS20920 | Not Available | Negative | 120658 - 121212 | 19992.8 |
| hsp20/alpha crystallin family protein | SAMIE_RS20925 | Not Available | Negative | 121263 - 121775 | 19270.8 |
| hsp20 family protein | SAMIE_RS20930 | Not Available | Negative | 121872 - 122348 | 17570.6 |
| sensor domain-containing diguanylate cyclase | SAMIE_RS20935 | Not Available | Positive | 122683 - 123834 | 41241.6 |
| tonb-dependent receptor | SAMIE_RS20940 | Not Available | Positive | 124015 - 125934 | 68742.1 |
| hypothetical protein | SAMIE_RS24015 | Not Available | Positive | 126023 - 126148 | 4662.52 |
| rna polymerase sigma factor rpoh | SAMIE_RS20945 | Not Available | Negative | 126219 - 127157 | 35634.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

