Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s26 family signal peptidase | SAMIE_RS20705 | Not Available | Negative | 83309 - 83872 | 20123.5 |
| trbi f-type domain-containing protein | SAMIE_RS20710 | Not Available | Negative | 83853 - 84500 | 22878.6 |
| hypothetical protein | SAMIE_RS20715 | Not Available | Negative | 84493 - 84867 | 13712.0 |
| type iv secretion system protein trac | SAMIE_RS20720 | Not Available | Negative | 84873 - 87467 | 95935.4 |
| trav family lipoprotein | SAMIE_RS20725 | Not Available | Negative | 87469 - 88482 | 33945.8 |
| dsbc family protein | SAMIE_RS20730 | Not Available | Negative | 88458 - 89345 | 30965.2 |
| trab/virb10 family protein | SAMIE_RS20735 | Not Available | Negative | 89332 - 90663 | 46962.4 |
| type-f conjugative transfer system secretin trak | SAMIE_RS20740 | Not Available | Negative | 90668 - 91471 | 28185.8 |
| type iv conjugative transfer system protein trae | SAMIE_RS20745 | Not Available | Negative | 91468 - 92034 | 20751.2 |
| type iv conjugative transfer system protein tral | SAMIE_RS20750 | Not Available | Negative | 92036 - 92326 | 10647.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

