Sphingobium amiense strain DSM 16289

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium amiense strain DSM 16289 is a bacterium characterized by the presence of flagella, which may contribute to its motility and ability to navigate through various environments. This strain is notable for its genomic architecture, containing four replicons, which suggests a level of genetic complexity that may enhance its adaptability and survival capabilities in diverse ecological niches. The strain has been cataloged with several accessions, specifically NZ_AP018665.1, NZ_AP018666.1, NZ_AP018667.1, and NZ_AP018668.1, indicating its well-documented genetic information available in genomic databases. These accessions provide insights into its genetic makeup and facilitate further research into its biochemical pathways and ecological roles. Given its flagellated nature and genomic characteristics, Sphingobium amiense strain DSM 16289 may play a significant role in biogeochemical cycles, particularly in environments where motility is advantageous for nutrient acquisition or interaction with other microbial communities. Understanding the traits of this strain can contribute to our knowledge of microbial behavior in specific habitats, as well as its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium amiense
Strainstrain DSM 16289

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete

Gene Summary

Adenine Count

38812 bp

Thymine Count

37780 bp

Guanine Count

66797 bp

Cytosine Count

68732 bp

Genome Length

212121 bp

Protein-coding Genes

218 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter permease subunitSAMIE_RS20375Not AvailablePositive22244 - 2367751479.9
duf3240 family proteinSAMIE_RS20380Not AvailablePositive23670 - 2396910895.3
tolc family proteinSAMIE_RS20385Not AvailablePositive23966 - 2494034787.4
is1380-like element issp1 family transposaseSAMIE_RS20395Not AvailableNegative24979 - 2632849421.6
amp-binding proteinSAMIE_RS20400Not AvailableNegative26429 - 2700120972.0
Zinc-containing alcohol dehydrogenase superfamily proteinSAMIE_RS20405Not AvailablePositive27223 - 2870451713.1
fad-dependent monooxygenaseSAMIE_RS20410Not AvailablePositive29180 - 3077559550.3
tetr family transcriptional regulator c-terminal domain-containing proteinSAMIE_RS20415Not AvailableNegative31123 - 3147313091.6
tetr/acrr family transcriptional regulatorSAMIE_RS20420Not AvailableNegative31451 - 316999532.35
copg family transcriptional regulatorSAMIE_RS20425Not AvailablePositive31748 - 3211614120.5

Displaying genes 241 – 250 of 546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.