Sphingobium amiense strain DSM 16289

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium amiense strain DSM 16289 is a bacterium characterized by the presence of flagella, which may contribute to its motility and ability to navigate through various environments. This strain is notable for its genomic architecture, containing four replicons, which suggests a level of genetic complexity that may enhance its adaptability and survival capabilities in diverse ecological niches. The strain has been cataloged with several accessions, specifically NZ_AP018665.1, NZ_AP018666.1, NZ_AP018667.1, and NZ_AP018668.1, indicating its well-documented genetic information available in genomic databases. These accessions provide insights into its genetic makeup and facilitate further research into its biochemical pathways and ecological roles. Given its flagellated nature and genomic characteristics, Sphingobium amiense strain DSM 16289 may play a significant role in biogeochemical cycles, particularly in environments where motility is advantageous for nutrient acquisition or interaction with other microbial communities. Understanding the traits of this strain can contribute to our knowledge of microbial behavior in specific habitats, as well as its potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium amiense
Strainstrain DSM 16289

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete

Gene Summary

Adenine Count

38812 bp

Thymine Count

37780 bp

Guanine Count

66797 bp

Cytosine Count

68732 bp

Genome Length

212121 bp

Protein-coding Genes

218 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tniq family proteinSAMIE_RS20290Not AvailablePositive5998 - 726046411.5
AttlNot AvailableNot AvailablePositive7455 - 7467Not Available
marr family transcriptional regulatorSAMIE_RS20295Not AvailableNegative7515 - 864539818.5
Gst-loxp-cre recombinase fusion proteinSAMIE_RS20300Not AvailablePositive8893 - 1013444367.8
integraseSAMIE_RS20305Not AvailablePositive10202 - 1064216002.4
sigma-54-dependent fis family transcriptional regulatorSAMIE_RS20310Not AvailablePositive10858 - 1267266331.1
2-hydroxymuconate tautomeraseSAMIE_RS20315Not AvailablePositive12756 - 129477032.58
is5/is1182 family transposaseSAMIE_RS20320Not AvailableNegative12964 - 130473048.68
is3 family transposaseSAMIE_RS23850Not AvailablePositive13038 - 132497507.87
Isrso10-transposase orfa proteinSAMIE_RS24170Not AvailablePositive13442 - 136909379.42

Displaying genes 221 – 230 of 546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.