Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tniq family protein | SAMIE_RS20290 | Not Available | Positive | 5998 - 7260 | 46411.5 |
| Attl | Not Available | Not Available | Positive | 7455 - 7467 | Not Available |
| marr family transcriptional regulator | SAMIE_RS20295 | Not Available | Negative | 7515 - 8645 | 39818.5 |
| Gst-loxp-cre recombinase fusion protein | SAMIE_RS20300 | Not Available | Positive | 8893 - 10134 | 44367.8 |
| integrase | SAMIE_RS20305 | Not Available | Positive | 10202 - 10642 | 16002.4 |
| sigma-54-dependent fis family transcriptional regulator | SAMIE_RS20310 | Not Available | Positive | 10858 - 12672 | 66331.1 |
| 2-hydroxymuconate tautomerase | SAMIE_RS20315 | Not Available | Positive | 12756 - 12947 | 7032.58 |
| is5/is1182 family transposase | SAMIE_RS20320 | Not Available | Negative | 12964 - 13047 | 3048.68 |
| is3 family transposase | SAMIE_RS23850 | Not Available | Positive | 13038 - 13249 | 7507.87 |
| Isrso10-transposase orfa protein | SAMIE_RS24170 | Not Available | Positive | 13442 - 13690 | 9379.42 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

