Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium amiense |
| Strain | strain DSM 16289 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete
Gene Summary
Adenine Count
38812 bp
Thymine Count
37780 bp
Guanine Count
66797 bp
Cytosine Count
68732 bp
Genome Length
212121 bp
Protein-coding Genes
218 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dsbc family protein | SAMIE_RS21820 | Not Available | Negative | 89098 - 89976 | 30992.3 |
| trbi/virb10 family protein | SAMIE_RS21825 | Not Available | Negative | 89963 - 91303 | 47041.6 |
| type-f conjugative transfer system secretin trak | SAMIE_RS21830 | Not Available | Negative | 91305 - 92114 | 28709.4 |
| type iv conjugative transfer system protein trae | SAMIE_RS21835 | Not Available | Negative | 92114 - 92680 | 20858.4 |
| type iv conjugative transfer system protein tral | SAMIE_RS21840 | Not Available | Negative | 92682 - 92972 | 10633.3 |
| trbc/virb2 family protein | SAMIE_RS21845 | Not Available | Negative | 93031 - 93351 | 10490.0 |
| hypothetical protein | SAMIE_RS21850 | Not Available | Positive | 93729 - 94193 | 16876.2 |
| hypothetical protein | SAMIE_RS21855 | Not Available | Positive | 94295 - 94873 | 21192.2 |
| lytic transglycosylase domain-containing protein | SAMIE_RS23880 | Not Available | Negative | 94870 - 95319 | 16589.1 |
| hypothetical protein | SAMIE_RS21865 | Not Available | Positive | 95962 - 97260 | 48422.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

