Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ligase-associated dna damage response dexh box helicaseYGS_RS13685Not AvailablePositive2781758 - 278416988471.6
dj-1/pfpi family proteinYGS_RS13690Not AvailableNegative2784173 - 278490725770.3
membrane-like proteinYGS_RS13695Not AvailableNegative2784949 - 278546418371.6
dna-3-methyladenine glycosylase iYGS_RS13700Not AvailableNegative2785461 - 278603321233.4
dna topoisomerase (atp-hydrolyzing) subunit bYGS_RS13705Not AvailableNegative2786037 - 278853891621.7
hypothetical proteinYGS_RS13710Not AvailablePositive2788626 - 278911416686.0
hypothetical proteinYGS_RS13715Not AvailableNegative2789119 - 279030642117.9
ycze/yyas/yitt family proteinYGS_RS13720Not AvailableNegative2790447 - 279105821947.7
plp-dependent aminotransferase family proteinYGS_RS13725Not AvailablePositive2791150 - 279261652530.4
inorganic diphosphataseYGS_RS13730Not AvailableNegative2792754 - 279329619911.7

Displaying genes 4421 – 4430 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.