Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bola family proteinYGS_RS11895Not AvailableNegative2442897 - 244318410188.0
j domain-containing proteinYGS_RS11900Not AvailablePositive2443230 - 244385023232.0
endonuclease domain-containing proteinYGS_RS11905Not AvailablePositive2444147 - 244543846889.8
cobaltochelatase subunit cobsYGS_RS11910Not AvailablePositive2445526 - 244653337541.7
osmc family proteinYGS_RS11915Not AvailablePositive2446568 - 244699015346.3
tyrosine-protein phosphataseYGS_RS11920Not AvailablePositive2446987 - 244776628390.9
cobaltochelatase subunit cobtYGS_RS11925Not AvailablePositive2447763 - 244958967312.1
grea/greb family elongation factorYGS_RS11930Not AvailablePositive2449668 - 245013817470.8
dps family proteinYGS_RS11935Not AvailableNegative2450210 - 245070118018.1
tmem165/gdt1 family proteinYGS_RS11940Not AvailableNegative2450826 - 245139219221.5

Displaying genes 4061 – 4070 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.