Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yqij family proteinYGS_RS11505Not AvailablePositive2357299 - 235789821192.9
flotillin domain-containing proteinYGS_RS11510Not AvailablePositive2357914 - 235962362011.1
tcr/tet family mfs transporterYGS_RS11515Not AvailablePositive2359768 - 236102743927.4
glutamine-hydrolyzing gmp synthaseYGS_RS11520Not AvailablePositive2361113 - 236267256644.1
duf6356 family proteinYGS_RS11525Not AvailableNegative2362739 - 236300510198.6
aminotransferaseYGS_RS11530Not AvailablePositive2363121 - 236429642035.6
dna recombination protein rmucYGS_RS11535Not AvailablePositive2364394 - 236592055679.3
hypothetical proteinYGS_RS26840Not AvailablePositive2366004 - 23661776889.36
nicotinate-nucleotide adenylyltransferaseYGS_RS11540Not AvailablePositive2366390 - 236701923899.1
ribosome silencing factorYGS_RS11545Not AvailablePositive2367032 - 236742113861.5

Displaying genes 3981 – 3990 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.