Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gfo/idh/moca family oxidoreductaseYGS_RS24925Not AvailableNegative1811150 - 181208834276.7
class iii extradiol dioxygenase subunit betaYGS_RS24930Not AvailableNegative1812219 - 181311532905.1
protocatechuate 4,5-dioxygenase subunit alphaYGS_RS24935Not AvailableNegative1813117 - 181356917275.6
amidohydrolase family proteinYGS_RS24940Not AvailableNegative1813566 - 181459137911.6
nad(p)-dependent oxidoreductaseYGS_RS24945Not AvailableNegative1814680 - 181564833344.1
lysr substrate-binding domain-containing proteinYGS_RS24950Not AvailableNegative1815714 - 181686540899.0
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseYGS_RS24955Not AvailablePositive1816969 - 181764323674.6
4-oxalomesaconate tautomeraseYGS_RS24960Not AvailablePositive1817636 - 181870037081.3
amidohydrolase family proteinYGS_RS24965Not AvailablePositive1818803 - 181967532155.2
carboxylesterase/lipase family proteinYGS_RS24970Not AvailableNegative1819672 - 182121355556.4

Displaying genes 1601 – 1610 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.