Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family nad(p)-dependent oxidoreductaseYGS_RS24710Not AvailableNegative1770796 - 177150624741.0
aldehyde dehydrogenaseYGS_RS24715Not AvailableNegative1771917 - 177223110606.4
alpha-ketoglutarate-dependent dioxygenase alkbYGS_RS24720Not AvailableNegative1772322 - 177294223124.5
sos response-associated peptidase family proteinYGS_RS24725Not AvailableNegative1772951 - 177337616155.4
sos response-associated peptidaseYGS_RS24730Not AvailablePositive1773532 - 177414923387.0
duf1810 domain-containing proteinYGS_RS24735Not AvailablePositive1774149 - 177456515361.4
metallophosphoesteraseYGS_RS24740Not AvailablePositive1774577 - 177578543047.1
transposaseYGS_RS24745Not AvailablePositive1776041 - 177637011959.6
is66 family insertion sequence element accessory protein tnpbYGS_RS24750Not AvailablePositive1776367 - 177671412908.7
is66 family transposaseYGS_RS24755Not AvailablePositive1776774 - 177838760033.0

Displaying genes 1561 – 1570 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.