Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptor domain-containing proteinYGS_RS22560Not AvailablePositive1229217 - 123191395979.2
m20/m25/m40 family metallo-hydrolaseYGS_RS22565Not AvailablePositive1231973 - 123327144814.0
winged helix-turn-helix domain-containing proteinYGS_RS22570Not AvailableNegative1233298 - 123445543528.0
ketosteroid isomerase-related proteinYGS_RS22575Not AvailableNegative1234503 - 123489814784.5
s-formylglutathione hydrolaseYGS_RS22580Not AvailableNegative1234954 - 123580230593.1
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseYGS_RS22585Not AvailableNegative1235826 - 123693839449.6
lysr family transcriptional regulatorYGS_RS22590Not AvailablePositive1237040 - 123794232983.9
laci family dna-binding transcriptional regulatorYGS_RS22595Not AvailableNegative1237943 - 123897736864.9
tonb-dependent receptorYGS_RS22600Not AvailablePositive1239260 - 124194196527.4
alpha-amylase family glycosyl hydrolaseYGS_RS22605Not AvailablePositive1242053 - 124384063792.8

Displaying genes 1121 – 1130 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.