Sphingobium sp. YG1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. YG1 is a bacterium characterized by the presence of flagella, which suggests motility and the ability to navigate its environment effectively. This trait may play a critical role in its ecological interactions and survival strategies. The organism has two replicons, indicating a complex genomic structure that could enhance its adaptability and metabolic versatility. The genomic accessions for Sphingobium sp. YG1 are NZ_AP018518.1 and NZ_AP018519.1, which provide a foundation for further genomic analysis and characterization. These accessions can be utilized for comparative studies, potentially revealing insights into the genetic basis of its functions and adaptations. In terms of ecological significance, the motility afforded by its flagella may enable Sphingobium sp. YG1 to efficiently explore diverse habitats, facilitating interactions with other microorganisms and contributing to nutrient cycling within its ecosystem. The dual replicon structure may also support its ability to adapt to various environmental conditions, possibly enhancing its role in bioremediation processes or other ecological functions. Overall, the combination of motility and genomic complexity positions Sphingobium sp. YG1 as a potentially important player in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. YG1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. YG1 chromosome 2, complete sequence.

Gene Summary

Adenine Count

349326 bp

Thymine Count

349971 bp

Guanine Count

576264 bp

Cytosine Count

571640 bp

Genome Length

1847201 bp

Protein-coding Genes

1590 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-methyl-5-thioribose kinaseYGS_RS22170Not AvailableNegative1124894 - 112613545560.7
acireductone synthaseYGS_RS22175Not AvailableNegative1126132 - 112681824325.9
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenaseYGS_RS22180Not AvailableNegative1126815 - 112736620159.7
methylthioribulose 1-phosphate dehydrataseYGS_RS22185Not AvailableNegative1127363 - 112801623173.9
membrane-bound pqq-dependent dehydrogenase, glucose/quinate/shikimate familyYGS_RS22190Not AvailablePositive1128250 - 113068287334.3
hypothetical proteinYGS_RS27025Not AvailablePositive1130690 - 11308335167.94
gaf domain-containing proteinYGS_RS22195Not AvailablePositive1130833 - 113136619279.7
hypothetical proteinYGS_RS22200Not AvailablePositive1131603 - 113191110320.3
response regulatorYGS_RS22205Not AvailablePositive1131908 - 1134730101674.0
diguanylate cyclaseYGS_RS22210Not AvailablePositive1134727 - 113566233864.7

Displaying genes 1041 – 1050 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.