Fischerella sp. NIES-4106

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Hapalosiphonaceae

Genus

Fischerella

Description

Fischerella sp. NIES-4106 is a cyanobacterium characterized by having a total of nine replicons. The genomic information of this strain is accessible through several accession numbers: NZ_AP018298.1, NZ_AP018299.1, NZ_AP018300.1, NZ_AP018301.1, NZ_AP018302.1, NZ_AP018303.1, NZ_AP018304.1, NZ_AP018305.1, and NZ_AP018306.1. Cyanobacteria like Fischerella play a significant role in aquatic ecosystems, contributing to nitrogen fixation and primary production. Their ability to thrive in various environments, including extreme conditions, highlights their ecological importance as they can enhance nutrient availability in their habitats. The multiple replicons may suggest a complex genomic organization, which can be associated with adaptability and metabolic versatility. Understanding the characteristics of Fischerella sp. NIES-4106, particularly its genomic structure, can provide insights into its ecological functions and potential applications in biotechnology, such as bioremediation or biofertilization. The data indicate that Fischerella sp. NIES-4106 is a valuable subject for research in microbial ecology and cyanobacterial diversity.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyHapalosiphonaceae
GenusFischerella
SpeciesFischerella sp. NIES-4106
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Fischerella sp. NIES-4106
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fischerella sp. NIES-4106 plasmid plasmid6 DNA, complete genome.

Gene Summary

Adenine Count

7427 bp

Thymine Count

7822 bp

Guanine Count

4554 bp

Cytosine Count

4786 bp

Genome Length

24589 bp

Protein-coding Genes

32 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phycobilisome rod-core linker polypeptideCDC30_RS29725Not AvailablePositive304266 - 30653685581.2
allophycocyanin subunit alpha-bCDC30_RS29730Not AvailablePositive306556 - 30707719683.6
photosystem ii d2 protein (photosystem q(a) protein)CDC30_RS29735Not AvailablePositive307120 - 30818139844.9
photosystem ii reaction center protein cp43CDC30_RS29740Not AvailablePositive308165 - 30958951379.7
photosystem ii chlorophyll-binding protein cp47CDC30_RS29745Not AvailablePositive309931 - 31146356780.9
photosystem ii reaction center phosphoprotein psbhCDC30_RS29750Not AvailablePositive311558 - 3117828251.56
hypothetical proteinCDC30_RS00005Not AvailableNegative1 - 1897333.8
hypothetical proteinCDC30_RS00010Not AvailablePositive286 - 4747654.28
hypothetical proteinCDC30_RS00015Not AvailablePositive527 - 124326961.7
ferredoxin-thioredoxin reductase variable chainCDC30_RS00020Not AvailablePositive1489 - 176110422.7

Displaying genes 491 – 500 of 6182 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.