Scytonema sp. NIES-4073

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Scytonemataceae

Genus

Kalymmatonema

Description

Scytonema sp. NIES-4073 is characterized by having a total of five replicons. This trait is significant as it may contribute to the organism's genetic diversity and adaptability. The strain has been cataloged under several accessions, which include NZ_AP018264.1, NZ_AP018265.1, NZ_AP018266.1, NZ_AP018267.1, and NZ_AP018268.1. These accessions serve as vital identifiers for researchers studying this particular cyanobacterial species. The presence of multiple replicons in Scytonema sp. NIES-4073 suggests a complex genomic architecture, which could potentially enhance its metabolic versatility and ecological resilience. Such genetic arrangements are often associated with organisms that thrive in various environments, enabling them to adapt to fluctuating conditions. In a broader ecological context, cyanobacteria like Scytonema play a crucial role in aquatic ecosystems, particularly in nutrient cycling and primary production. Their ability to fix atmospheric nitrogen contributes significantly to the nitrogen availability in their habitats, which can benefit surrounding flora and fauna. Additionally, the genomic insights gleaned from the accessions linked to Scytonema sp. NIES-4073 may provide further understanding of its ecological roles and potential applications in biotechnology, such as bioremediation or as a biofertilizer in agricultural practices.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyScytonemataceae
GenusKalymmatonema
SpeciesKalymmatonema gypsitolerans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Scytonema sp. NIES-4073 plasmid plasmid1 DNA, complete genome.

Gene Summary

Adenine Count

73665 bp

Thymine Count

66591 bp

Guanine Count

45568 bp

Cytosine Count

48938 bp

Genome Length

234762 bp

Protein-coding Genes

203 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseCDC39_RS38365Not AvailableNegative8810877 - 881193239952.0
hypothetical proteinCDC39_RS38370Not AvailableNegative8811981 - 881282031669.7
hypothetical proteinCDC39_RS38375Not AvailablePositive8813042 - 88132427448.33
Trna-argNot AvailableNot AvailablePositive8813603 - 8813676Not Available
group i intron-associated pd-(d/e)xk endonucleaseCDC39_RS38385Not AvailablePositive8813749 - 881440225584.5
m16 family metallopeptidaseCDC39_RS38390Not AvailableNegative8814500 - 8817340101701.0
trna lysidine(34) synthetase tilsCDC39_RS38395Not AvailablePositive8817637 - 881868039679.3
pilus motility taxis protein hmpfCDC39_RS38400Not AvailableNegative8818644 - 882036867351.8
response regulator transcription factorCDC39_RS38405Not AvailablePositive8821460 - 882182513330.3
chew domain-containing proteinCDC39_RS38410Not AvailablePositive8821839 - 882236919610.7

Displaying genes 7671 – 7680 of 8222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.