Anabaena variabilis NIES-23

Gram-negativeFilamentousMotileAerobe

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Nostocaceae

Genus

Trichormus

Description

Anabaena variabilis NIES-23 is a filamentous, heterotrophic, Gram-negative bacterium that exhibits aerobic metabolism. This species is characterized by its single filamentous cell arrangement and possesses flagella, which contribute to its mobility. The bacterium thrives in mesophilic temperature ranges, suggesting an optimal growth environment typically found in moderate temperature conditions. A. variabilis NIES-23 is free-living, indicating that it does not rely on a host organism for survival and can exist independently in various habitats. Its adaptability to multiple environments may play a crucial role in its ecological interactions and nutrient cycling within those ecosystems. The bacterium has a complex genomic structure, with three replicons and a double-membrane system, which is indicative of its evolutionary adaptations. The presence of multiple accessions, such as NZ_AP018216.1, NZ_AP018217.1, and NZ_AP018218.1, suggests that A. variabilis NIES-23 has been well-documented and studied, contributing to a better understanding of its biology and ecological significance. The ability of A. variabilis NIES-23 to thrive in diverse habitats and its role as a free-living organism may position it as an important player in microbial communities, particularly in nutrient cycling processes. Its heterotrophic nature allows it to utilize organic material, potentially influencing the dynamics of carbon and nitrogen within its ecosystem.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyNostocaceae
GenusTrichormus
SpeciesTrichormus variabilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments - Singles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Anabaena variabilis NIES-23 DNA, nearly complete genome.

Gene Summary

Adenine Count

1875824 bp

Thymine Count

1880489 bp

Guanine Count

1325774 bp

Cytosine Count

1321666 bp

Genome Length

6411850 bp

Protein-coding Genes

5261 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr00297 family proteinCA725_RS00020Not AvailablePositive1659 - 245627557.1
peptidylprolyl isomeraseCA725_RS00025Not AvailablePositive2714 - 347228783.6
peptidase domain-containing abc transporterCA725_RS00030Not AvailablePositive3421 - 610299825.0
transposaseCA725_RS00035Not AvailablePositive6439 - 10784155839.0
hypothetical proteinCA725_RS00040Not AvailableNegative11116 - 1175124106.4
duf1565 domain-containing proteinCA725_RS00045Not AvailableNegative11889 - 1397374130.4
uma2 family endonucleaseCA725_RS00050Not AvailableNegative14185 - 1475421991.2
abc transporter atp-binding proteinCA725_RS00055Not AvailablePositive15168 - 1616335758.2
abc transporter permeaseCA725_RS00060Not AvailablePositive16164 - 1697629172.8
gldg family proteinCA725_RS00065Not AvailablePositive17045 - 1874862637.0

Displaying genes 11 – 20 of 5989 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

87 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da

Displaying 1–10 of 87 metabolites

Health Effects

No health effects information available for this bacterium.