Calothrix brevissima NIES-22

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix brevissima NIES-22 is characterized by its unique genetic structure, comprising nine replicons. This trait indicates a complex genomic organization, which may be indicative of its adaptability and potential metabolic versatility. The organism is represented by multiple accessions in genetic databases, specifically NZ_AP018207.1 through NZ_AP018215.1, reflecting a comprehensive genetic characterization that can be utilized for further study or comparison with other cyanobacterial species. As a member of the genus Calothrix, this cyanobacterium is likely involved in nitrogen fixation and plays a significant role in aquatic ecosystems, particularly in nutrient cycling. The presence of multiple replicons suggests that Calothrix brevissima NIES-22 may possess varied functional capabilities, which could enhance its survival in diverse environmental conditions. The genomic data associated with each accession can provide insights into the organism's evolutionary adaptations and ecological roles. Overall, the genomic complexity of Calothrix brevissima NIES-22, as evidenced by its nine replicons and multiple accessions, underscores its potential significance in ecological research, particularly in terms of its contributions to nutrient cycling and biological productivity in aquatic environments. Further exploration of its genetic traits may reveal additional functional attributes that are crucial for understanding its role in the ecosystem.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix brevissima
StrainNIES-22

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix brevissima NIES-22
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

10615 bp

Thymine Count

11100 bp

Guanine Count

7393 bp

Cytosine Count

6776 bp

Genome Length

35884 bp

Protein-coding Genes

35 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system vapc family toxinCA724_RS05690Not AvailablePositive1487609 - 148801015210.4
hypothetical proteinCA724_RS05695Not AvailablePositive1488282 - 14884978536.56
uma2 family endonucleaseCA724_RS05700Not AvailablePositive1488655 - 148924823152.7
lema family proteinCA724_RS05705Not AvailablePositive1489739 - 149032621706.0
m48 family metallopeptidaseCA724_RS05710Not AvailablePositive1490333 - 149224070028.5
hypothetical proteinCA724_RS05715Not AvailablePositive1492648 - 14929029722.65
murein transglycosylase aCA724_RS05720Not AvailablePositive1492906 - 149416546353.7
duf5895 domain-containing proteinCA724_RS05725Not AvailableNegative1494302 - 149517132462.4
nucleotide exchange factor grpeCA724_RS05730Not AvailablePositive1495573 - 149605519411.3
abc transporter permeaseCA724_RS05735Not AvailablePositive1496161 - 149693428473.0

Displaying genes 1731 – 1740 of 7413 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001827nonanoateC9H17O2Chemical structure of nonanoateNot available
Average157.234Da
Monoisotopic157.123403367Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.