Calothrix sp. NIES-2100

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix sp. NIES-2100 is a cyanobacterium characterized by having two replicons, which are essential for its genetic stability and replication. The organism is cataloged under two specific accessions: NZ_AP018178.1 and NZ_AP018179.1, which provide unique identifiers for its genomic sequences in biological databases. Cyanobacteria, including Calothrix species, are known for their ability to perform photosynthesis, contributing significantly to the global carbon cycle and oxygen production. The presence of two replicons in Calothrix sp. NIES-2100 may suggest a complex genetic organization that could facilitate its adaptability to various environmental conditions. This trait is often linked to the organism's potential resilience and versatility in different ecosystems. Understanding the genomic makeup of Calothrix sp. NIES-2100 through its accessions can offer insights into its metabolic pathways and ecological roles. Cyanobacteria are crucial in nitrogen fixation and can contribute to nutrient cycling in aquatic and terrestrial ecosystems. Thus, the study of this organism could provide valuable information about its ecological functions, contributions to biodiversity, and potential applications in biotechnology, such as biofertilizers or bioremediation agents in polluted environments.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix sp. NIES-2100
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix sp. NIES-2100
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Calothrix sp. NIES-2100 DNA, nearly complete genome.

Gene Summary

Adenine Count

2902741 bp

Thymine Count

2895470 bp

Guanine Count

2052611 bp

Cytosine Count

2051206 bp

Genome Length

9909373 bp

Protein-coding Genes

7860 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is1634 family transposaseCA734_RS04350Not AvailablePositive1085839 - 108624615530.8
multidrug mfs transporterCA734_RS04355Not AvailablePositive1086222 - 108718034536.9
glycoside hydrolase family 19 proteinCA734_RS04360Not AvailableNegative1087482 - 108830329776.7
3d domain-containing proteinCA734_RS04365Not AvailableNegative1088326 - 108887419348.2
glycosyl hydrolase family 28-related proteinCA734_RS04370Not AvailableNegative1089026 - 109083465530.3
malectin domain-containing carbohydrate-binding proteinCA734_RS04375Not AvailableNegative1090812 - 109228454663.2
cupin domain-containing proteinCA734_RS04380Not AvailableNegative1092676 - 109305914323.2
multidrug mfs transporterCA734_RS04385Not AvailableNegative1093237 - 10933714872.74
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)CA734_RS04390Not AvailableNegative1093388 - 109441637350.6
helix-turn-helix domain-containing proteinCA734_RS04395Not AvailableNegative1094761 - 109520716618.2

Displaying genes 891 – 900 of 8016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.