Calothrix sp. NIES-2100

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix sp. NIES-2100 is a cyanobacterium characterized by having two replicons, which are essential for its genetic stability and replication. The organism is cataloged under two specific accessions: NZ_AP018178.1 and NZ_AP018179.1, which provide unique identifiers for its genomic sequences in biological databases. Cyanobacteria, including Calothrix species, are known for their ability to perform photosynthesis, contributing significantly to the global carbon cycle and oxygen production. The presence of two replicons in Calothrix sp. NIES-2100 may suggest a complex genetic organization that could facilitate its adaptability to various environmental conditions. This trait is often linked to the organism's potential resilience and versatility in different ecosystems. Understanding the genomic makeup of Calothrix sp. NIES-2100 through its accessions can offer insights into its metabolic pathways and ecological roles. Cyanobacteria are crucial in nitrogen fixation and can contribute to nutrient cycling in aquatic and terrestrial ecosystems. Thus, the study of this organism could provide valuable information about its ecological functions, contributions to biodiversity, and potential applications in biotechnology, such as biofertilizers or bioremediation agents in polluted environments.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix sp. NIES-2100
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix sp. NIES-2100
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Calothrix sp. NIES-2100 DNA, nearly complete genome.

Gene Summary

Adenine Count

2902741 bp

Thymine Count

2895470 bp

Guanine Count

2052611 bp

Cytosine Count

2051206 bp

Genome Length

9909373 bp

Protein-coding Genes

7860 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
right-handed parallel beta-helix repeat-containing proteinCA734_RS01950Not AvailablePositive512813 - 51419250794.2
o-antigen ligase family proteinCA734_RS01955Not AvailablePositive514356 - 51562146706.4
glycosyltransferase family 4 proteinCA734_RS01960Not AvailablePositive515659 - 51674440051.0
wecb/taga/cpsf family glycosyltransferaseCA734_RS01965Not AvailablePositive516792 - 51754728407.9
endo-1,4-beta-xylanaseCA734_RS01970Not AvailablePositive517952 - 51913044454.2
gumc family proteinCA734_RS01975Not AvailablePositive519323 - 52152480832.8
class i sam-dependent methyltransferaseCA734_RS01980Not AvailableNegative521726 - 52234922919.5
ferrochelataseCA734_RS01985Not AvailablePositive522443 - 52360644213.3
wd40 repeat domain-containing proteinCA734_RS01990Not AvailablePositive523821 - 52487937660.3
duf4126 domain-containing proteinCA734_RS01995Not AvailableNegative524911 - 52547421056.6

Displaying genes 411 – 420 of 8016 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.