Fusobacterium varium strain Fv113-g1

Gram-negativeRodNon-motileAnaerobe

Kingdom

Fusobacteriati

Phylum

Fusobacteriota

Class

Fusobacteriia

Order

Fusobacteriales

Family

Fusobacteriaceae

Genus

Fusobacterium

Description

Fusobacterium varium strain Fv113-g1 is a Gram-negative, rod-shaped bacterium classified as a chemoheterotroph and an anaerobe, thriving optimally at 37°C. This strain is non-motile but possesses flagella. It has three replicons identified in its genomic structure, with accession numbers NZ_AP017968.1, NZ_AP017969.1, and NZ_AP017970.1. F. varium strain Fv113-g1 is known to inhabit multiple environments, indicating its versatility in adapting to various habitats. It is associated with severe infections in its hosts, which include Homo sapiens (humans) and Bos (cattle). The pathogenic potential of this strain underscores its medical relevance, particularly in understanding infections that affect humans and livestock. Given its anaerobic nature, F. varium strain Fv113-g1 likely plays a role in specific ecological niches where oxygen levels are low, contributing to the microbiota of its hosts. Its ability to utilize organic compounds as an energy source allows it to thrive in diverse environments, potentially influencing gastrointestinal health. The presence of flagella may aid in its colonization of host tissues, although it is non-motile in the traditional sense. In summary, the traits of Fusobacterium varium strain Fv113-g1 not only highlight its significance in clinical microbiology but also suggest its ecological roles in the gut microbiomes of mammals, where it may impact both health and disease dynamics.

Taxonomy

KingdomFusobacteriati
PhylumFusobacteriota
ClassFusobacteriia
OrderFusobacteriales
FamilyFusobacteriaceae
GenusFusobacterium
SpeciesFusobacterium varium
Strainstrain Fv113-g1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Fusobacterium varium strain Fv113-g1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeNot Available
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Bos
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete

Gene Summary

Adenine Count

34336 bp

Thymine Count

31354 bp

Guanine Count

12863 bp

Cytosine Count

11070 bp

Genome Length

89623 bp

Protein-coding Genes

76 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretory system conjugative dna transfer family proteinFV113G1_RS17995Not AvailablePositive9957 - 1188572394.4
hypothetical proteinFV113G1_RS18000Not AvailablePositive11906 - 1226214179.1
p-type conjugative transfer atpase trbbFV113G1_RS18005Not AvailablePositive12234 - 1316934641.2
virb3 family type iv secretion system proteinFV113G1_RS18010Not AvailablePositive13169 - 134149412.55
conjugal transfer protein trbeFV113G1_RS18015Not AvailablePositive13563 - 1591189549.9
mipa/ompv family proteinFV113G1_RS18020Not AvailablePositive15916 - 1665927525.6
hypothetical proteinFV113G1_RS18025Not AvailablePositive16671 - 1720421708.5
hypothetical proteinFV113G1_RS18030Not AvailableNegative17223 - 1780423566.2
hypothetical proteinFV113G1_RS18035Not AvailablePositive17919 - 1841619502.1
pcfj domain-containing proteinFV113G1_RS18040Not AvailablePositive18647 - 2006556146.5

Displaying genes 11 – 20 of 3755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

347 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 347 metabolites

Health Effects

Health ConditionRelationReference
Severe infectionsCausesPMC9009667

Displaying health effects 1 – 1 of 1 in total