Sphingobium cloacae strain JCM 10874

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cloacae strain JCM 10874 is a notable bacterium characterized by the presence of flagella, which facilitates motility. This trait allows the organism to navigate its environment, potentially enhancing its ability to colonize diverse ecological niches. The strain possesses six replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Sphingobium cloacae strain JCM 10874 is accessible through several accession numbers: NZ_AP017655.1, NZ_AP017656.1, NZ_AP017657.1, NZ_AP017658.1, NZ_AP017659.1, and NZ_AP017660.1. These accessions provide insights into the genetic makeup of the strain, which is essential for understanding its functional capabilities and ecological roles. In terms of ecological significance, the presence of flagella suggests that Sphingobium cloacae strain JCM 10874 may play an important role in biogeochemical processes, particularly in environments where movement toward nutrients or away from toxic substances is critical. The strain's ability to thrive in various environments could contribute to its role in biodegradation and nutrient cycling, highlighting its potential utility in environmental microbiology and bioremediation efforts. Overall, the traits of Sphingobium cloacae strain JCM 10874 indicate its adaptability and significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cloacae
Strainstrain JCM 10874

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

381 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trae/trak family type iv conjugative transfer system proteinSCLO_RS01115Not AvailableNegative209428 - 21006623678.4
type iv conjugative transfer system protein tralSCLO_RS01120Not AvailableNegative210076 - 21034210215.8
hypothetical proteinSCLO_RS01125Not AvailableNegative210477 - 21079410681.3
dsbc family proteinSCLO_RS01130Not AvailableNegative210952 - 21172226973.2
hypothetical proteinSCLO_RS01135Not AvailableNegative211709 - 21202610929.1
helix-turn-helix domain-containing proteinSCLO_RS01140Not AvailablePositive212475 - 21289115564.8
nucleoside-diphosphate kinaseSCLO_RS01145Not AvailableNegative213409 - 2135886571.76
yggs family pyridoxal phosphate-dependent enzymeSCLO_RS01150Not AvailableNegative213578 - 21440229455.3
marr family winged helix-turn-helix transcriptional regulatorSCLO_RS01155Not AvailablePositive214492 - 21511822192.4
thioredoxinSCLO_RS01160Not AvailablePositive215198 - 2154438217.76

Displaying genes 891 – 900 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.