Sphingobium cloacae strain JCM 10874

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cloacae strain JCM 10874 is a notable bacterium characterized by the presence of flagella, which facilitates motility. This trait allows the organism to navigate its environment, potentially enhancing its ability to colonize diverse ecological niches. The strain possesses six replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Sphingobium cloacae strain JCM 10874 is accessible through several accession numbers: NZ_AP017655.1, NZ_AP017656.1, NZ_AP017657.1, NZ_AP017658.1, NZ_AP017659.1, and NZ_AP017660.1. These accessions provide insights into the genetic makeup of the strain, which is essential for understanding its functional capabilities and ecological roles. In terms of ecological significance, the presence of flagella suggests that Sphingobium cloacae strain JCM 10874 may play an important role in biogeochemical processes, particularly in environments where movement toward nutrients or away from toxic substances is critical. The strain's ability to thrive in various environments could contribute to its role in biodegradation and nutrient cycling, highlighting its potential utility in environmental microbiology and bioremediation efforts. Overall, the traits of Sphingobium cloacae strain JCM 10874 indicate its adaptability and significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cloacae
Strainstrain JCM 10874

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

381 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphate-dependent aminotransferaseSCLO_RS00275Not AvailablePositive56641 - 5781042263.7
rid family hydrolaseSCLO_RS00280Not AvailablePositive57840 - 5822313734.6
hypothetical proteinSCLO_RS00285Not AvailableNegative58277 - 584145124.16
hypothetical proteinSCLO_RS23185Not AvailableNegative58764 - 590098553.45
phage integrase sam-like domain-containing proteinSCLO_RS23190Not AvailableNegative59018 - 5999536868.7
nucleoside-diphosphate kinaseSCLO_RS00295Not AvailablePositive59985 - 6027211255.5
type ii toxin-antitoxin system phd/yefm family antitoxinSCLO_RS00300Not AvailablePositive60642 - 608879016.93
type ii toxin-antitoxin system vapc family toxinSCLO_RS00305Not AvailablePositive60884 - 6127014094.9
type ii toxin-antitoxin system pard family antitoxinSCLO_RS00310Not AvailableNegative61351 - 616029417.21
is630 family transposaseSCLO_RS00315Not AvailableNegative61667 - 6273739862.6

Displaying genes 721 – 730 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.