Sphingobium cloacae strain JCM 10874

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cloacae strain JCM 10874 is a notable bacterium characterized by the presence of flagella, which facilitates motility. This trait allows the organism to navigate its environment, potentially enhancing its ability to colonize diverse ecological niches. The strain possesses six replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Sphingobium cloacae strain JCM 10874 is accessible through several accession numbers: NZ_AP017655.1, NZ_AP017656.1, NZ_AP017657.1, NZ_AP017658.1, NZ_AP017659.1, and NZ_AP017660.1. These accessions provide insights into the genetic makeup of the strain, which is essential for understanding its functional capabilities and ecological roles. In terms of ecological significance, the presence of flagella suggests that Sphingobium cloacae strain JCM 10874 may play an important role in biogeochemical processes, particularly in environments where movement toward nutrients or away from toxic substances is critical. The strain's ability to thrive in various environments could contribute to its role in biodegradation and nutrient cycling, highlighting its potential utility in environmental microbiology and bioremediation efforts. Overall, the traits of Sphingobium cloacae strain JCM 10874 indicate its adaptability and significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cloacae
Strainstrain JCM 10874

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

381 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hpr kinase/phosphorylaseSCLO_RS16030Not AvailableNegative3271353 - 327178714646.0
sensor histidine kinaseSCLO_RS16035Not AvailableNegative3271874 - 327346659111.3
response regulator transcription factorSCLO_RS16040Not AvailableNegative3273435 - 327413926456.8
phosphoenolpyruvate carboxykinaseSCLO_RS16045Not AvailablePositive3274421 - 327601957933.8
hypothetical proteinSCLO_RS16050Not AvailablePositive3276134 - 327645110561.7
ferredoxin--nadp reductaseSCLO_RS16055Not AvailablePositive3276635 - 327745030287.2
nudix hydrolaseSCLO_RS16060Not AvailableNegative3277583 - 327812519645.4
tpm domain-containing proteinSCLO_RS16065Not AvailableNegative3278122 - 327879924534.7
tpm domain-containing proteinSCLO_RS16070Not AvailableNegative3278799 - 327961427891.4
lema family proteinSCLO_RS16075Not AvailableNegative3279622 - 328022421565.6

Displaying genes 3841 – 3850 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.