Sphingobium cloacae strain JCM 10874

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cloacae strain JCM 10874 is a notable bacterium characterized by the presence of flagella, which facilitates motility. This trait allows the organism to navigate its environment, potentially enhancing its ability to colonize diverse ecological niches. The strain possesses six replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Sphingobium cloacae strain JCM 10874 is accessible through several accession numbers: NZ_AP017655.1, NZ_AP017656.1, NZ_AP017657.1, NZ_AP017658.1, NZ_AP017659.1, and NZ_AP017660.1. These accessions provide insights into the genetic makeup of the strain, which is essential for understanding its functional capabilities and ecological roles. In terms of ecological significance, the presence of flagella suggests that Sphingobium cloacae strain JCM 10874 may play an important role in biogeochemical processes, particularly in environments where movement toward nutrients or away from toxic substances is critical. The strain's ability to thrive in various environments could contribute to its role in biodegradation and nutrient cycling, highlighting its potential utility in environmental microbiology and bioremediation efforts. Overall, the traits of Sphingobium cloacae strain JCM 10874 indicate its adaptability and significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cloacae
Strainstrain JCM 10874

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

381 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorSCLO_RS06900Not AvailableNegative1413638 - 141602286728.1
o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family proteinSCLO_RS06905Not AvailablePositive1416567 - 141786546017.7
nad(p)/fad-dependent oxidoreductaseSCLO_RS06910Not AvailablePositive1417960 - 141918643782.5
2'-5' rna ligase family proteinSCLO_RS06915Not AvailableNegative1419193 - 141970818805.2
endolytic transglycosylase mltgSCLO_RS06920Not AvailableNegative1419744 - 142071535258.3
beta-ketoacyl-acp synthase iiSCLO_RS06925Not AvailableNegative1420726 - 142198543857.6
acyl carrier proteinSCLO_RS06930Not AvailableNegative1422172 - 14224058458.83
glycosyltransferase family 87 proteinSCLO_RS06935Not AvailablePositive1422612 - 142385344837.7
3-oxoacyl-[acyl-carrier-protein] reductaseSCLO_RS06940Not AvailableNegative1423807 - 142454724975.3
gxxexxy proteinSCLO_RS06945Not AvailableNegative1424550 - 142498116074.5

Displaying genes 2061 – 2070 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.