Sphingobium cloacae strain JCM 10874

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cloacae strain JCM 10874 is a notable bacterium characterized by the presence of flagella, which facilitates motility. This trait allows the organism to navigate its environment, potentially enhancing its ability to colonize diverse ecological niches. The strain possesses six replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The genomic data for Sphingobium cloacae strain JCM 10874 is accessible through several accession numbers: NZ_AP017655.1, NZ_AP017656.1, NZ_AP017657.1, NZ_AP017658.1, NZ_AP017659.1, and NZ_AP017660.1. These accessions provide insights into the genetic makeup of the strain, which is essential for understanding its functional capabilities and ecological roles. In terms of ecological significance, the presence of flagella suggests that Sphingobium cloacae strain JCM 10874 may play an important role in biogeochemical processes, particularly in environments where movement toward nutrients or away from toxic substances is critical. The strain's ability to thrive in various environments could contribute to its role in biodegradation and nutrient cycling, highlighting its potential utility in environmental microbiology and bioremediation efforts. Overall, the traits of Sphingobium cloacae strain JCM 10874 indicate its adaptability and significance in microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cloacae
Strainstrain JCM 10874

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

381 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system major pseudopilin gspgSCLO_RS05580Not AvailableNegative1141711 - 114217216563.8
type ii secretion system inner membrane protein gspfSCLO_RS05585Not AvailableNegative1142317 - 114353444111.8
type ii secretion system atpase gspeSCLO_RS05590Not AvailableNegative1143527 - 114507455697.0
type ii secretion system secretin gspdSCLO_RS05595Not AvailableNegative1145071 - 114725776443.0
type ii secretion system protein nSCLO_RS05600Not AvailableNegative1147254 - 114808729083.3
prolyl hydroxylase family proteinSCLO_RS05605Not AvailablePositive1148263 - 114891624206.7
gnat family n-acetyltransferaseSCLO_RS05610Not AvailableNegative1149010 - 114951317769.0
monofunctional biosynthetic peptidoglycan transglycosylaseSCLO_RS05615Not AvailablePositive1149688 - 115038325572.1
succinylglutamate-semialdehyde dehydrogenaseSCLO_RS05620Not AvailablePositive1150434 - 115186750466.5
uroporphyrinogen-iii c-methyltransferaseSCLO_RS05625Not AvailablePositive1151961 - 115274927190.1

Displaying genes 1791 – 1800 of 4575 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.