Variibacter gotjawalensis strain GJW-30

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Variibacter

Description

Variibacter gotjawalensis strain GJW-30 is characterized by having a single replicon and is cataloged under the accession number NZ_AP014946.1. This specific strain is part of the Variibacter genus, which is known for its diverse metabolic capabilities. The presence of only one replicon suggests a streamlined genomic organization, which may facilitate efficient replication and stability of the genetic material within the strain. Such a genomic structure can often be advantageous for survival in various environments, potentially aiding the organism in adapting to specific ecological niches. Given that Variibacter species are typically associated with soil and aquatic systems, the ecological implications of strain GJW-30 may include its role in nutrient cycling and organic matter degradation. This strain could contribute to the microbial diversity in its habitat, influencing the overall health and functioning of the ecosystem it inhabits. In summary, Variibacter gotjawalensis strain GJW-30, with its single replicon, exemplifies a simplified genomic structure that may enhance its adaptability and ecological role within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusVariibacter
SpeciesVariibacter gotjawalensis
Strainstrain GJW-30

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variibacter gotjawalensis strain GJW-30


Gene Summary

Adenine Count

875345 bp

Thymine Count

856663 bp

Guanine Count

1397758 bp

Cytosine Count

1456471 bp

Genome Length

4586237 bp

Protein-coding Genes

4421 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1,2-phenylacetyl-coa epoxidase subunit paadGJW30_RS00030Not AvailableNegative4195 - 471018616.4
1,2-phenylacetyl-coa epoxidase subunit paacGJW30_RS00035Not AvailableNegative4707 - 545627599.8
1,2-phenylacetyl-coa epoxidase subunit paabGJW30_RS00040Not AvailableNegative5465 - 575210797.8
1,2-phenylacetyl-coa epoxidase subunit paaaGJW30_RS00045Not AvailableNegative5757 - 676437898.2
phenylacetic acid degradation operon negative regulatory protein paaxGJW30_RS00050Not AvailableNegative6840 - 774832547.7
hypothetical proteinGJW30_RS00055Not AvailablePositive7871 - 80927284.15
bug family tripartite tricarboxylate transporter substrate binding proteinGJW30_RS00060Not AvailableNegative8150 - 910934043.1
thiamine pyrophosphate-binding proteinGJW30_RS00065Not AvailablePositive9293 - 1096960032.0
antibiotic biosynthesis monooxygenase family proteinGJW30_RS00070Not AvailableNegative11172 - 1149812381.5
hemin uptake protein hempGJW30_RS00075Not AvailablePositive11672 - 118666976.3

Displaying genes 21 – 30 of 4489 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.