Pseudomonas donghuensis strain SVBP6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas donghuensis strain SVBP6 is characterized by having a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number NWCB00000000.1, which provides a reference point for genomic studies and comparisons within the Pseudomonas genus. As part of the Pseudomonas species, SVBP6 is likely to exhibit traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse environments. Pseudomonas species are known for their ecological roles, often found in soil, water, and as plant-associated bacteria. They can contribute to nutrient cycling and have potential applications in bioremediation due to their ability to degrade various organic pollutants. The presence of a single replicon in Pseudomonas donghuensis strain SVBP6 may suggest a more efficient replication and maintenance of its genetic material, which could be advantageous in certain ecological niches. This trait could enhance its adaptability and survival in varying environmental conditions. Understanding the genomic features of Pseudomonas donghuensis strain SVBP6 is crucial for appreciating its ecological roles and potential applications in biotechnology, particularly in areas such as agriculture and environmental management. The streamlined genomic structure may also facilitate further research into its metabolic capabilities and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas donghuensis
Strainstrain SVBP6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas donghuensis strain SVBP6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas donghuensis strain SVBP6 scaffold40.1, whole genome

Gene Summary

Adenine Count

1068088 bp

Thymine Count

1077131 bp

Guanine Count

1782955 bp

Cytosine Count

1772948 bp

Genome Length

5701342 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4398 domain-containing proteinCOO64_19420Not AvailableNegative4119853 - 412026614648.2
pilin assembly proteinCOO64_19425Not AvailableNegative4120539 - 412088312562.9
phosphoenolpyruvate carboxylaseCOO64_19430Not AvailablePositive4121039 - 412366696796.5
adenylate kinaseCOO64_19435Not AvailablePositive4123924 - 412457123242.0
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabCOO64_19440Not AvailablePositive4124659 - 412533323860.8
hypothetical proteinCOO64_19445Not AvailablePositive4125463 - 412575910885.8
duf72 domain-containing proteinCOO64_19450Not AvailablePositive4125763 - 412663232271.6
isocitrate lyase/phosphoenolpyruvate mutase family proteinCOO64_19455Not AvailablePositive4126665 - 412749529257.6
extensinCOO64_19460Not AvailablePositive4127502 - 412819725783.0
energy transducer tonbCOO64_19465Not AvailableNegative4128201 - 412882122743.9

Displaying genes 3961 – 3970 of 5259 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.