Pseudomonas donghuensis strain SVBP6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas donghuensis strain SVBP6 is characterized by having a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number NWCB00000000.1, which provides a reference point for genomic studies and comparisons within the Pseudomonas genus. As part of the Pseudomonas species, SVBP6 is likely to exhibit traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse environments. Pseudomonas species are known for their ecological roles, often found in soil, water, and as plant-associated bacteria. They can contribute to nutrient cycling and have potential applications in bioremediation due to their ability to degrade various organic pollutants. The presence of a single replicon in Pseudomonas donghuensis strain SVBP6 may suggest a more efficient replication and maintenance of its genetic material, which could be advantageous in certain ecological niches. This trait could enhance its adaptability and survival in varying environmental conditions. Understanding the genomic features of Pseudomonas donghuensis strain SVBP6 is crucial for appreciating its ecological roles and potential applications in biotechnology, particularly in areas such as agriculture and environmental management. The streamlined genomic structure may also facilitate further research into its metabolic capabilities and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas donghuensis
Strainstrain SVBP6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas donghuensis strain SVBP6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas donghuensis strain SVBP6 scaffold40.1, whole genome

Gene Summary

Adenine Count

1068088 bp

Thymine Count

1077131 bp

Guanine Count

1782955 bp

Cytosine Count

1772948 bp

Genome Length

5701342 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein 2COO64_15530Not AvailableNegative3252090 - 325397970238.4
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhCOO64_15535Not AvailableNegative3253996 - 325446317703.6
ribosome silencing factorCOO64_15540Not AvailableNegative3254473 - 325490116027.9
nicotinate-nucleotide adenylyltransferaseCOO64_15545Not AvailableNegative3254947 - 325560324034.0
glutamate-5-semialdehyde dehydrogenaseCOO64_15550Not AvailableNegative3255635 - 325690645437.8
3-methyladenine dna glycosylaseCOO64_15555Not AvailablePositive3257178 - 325787025771.6
phosphoesteraseCOO64_15560Not AvailablePositive3257875 - 325919147289.2
atp-dependent proteaseCOO64_15565Not AvailableNegative3259195 - 325978521639.4
lrgb family proteinCOO64_15570Not AvailableNegative3259795 - 326051124872.3
cida/lrga family proteinCOO64_15575Not AvailableNegative3260508 - 326087013010.7

Displaying genes 3191 – 3200 of 5259 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.