Pseudomonas donghuensis strain SVBP6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas donghuensis strain SVBP6 is characterized by having a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number NWCB00000000.1, which provides a reference point for genomic studies and comparisons within the Pseudomonas genus. As part of the Pseudomonas species, SVBP6 is likely to exhibit traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse environments. Pseudomonas species are known for their ecological roles, often found in soil, water, and as plant-associated bacteria. They can contribute to nutrient cycling and have potential applications in bioremediation due to their ability to degrade various organic pollutants. The presence of a single replicon in Pseudomonas donghuensis strain SVBP6 may suggest a more efficient replication and maintenance of its genetic material, which could be advantageous in certain ecological niches. This trait could enhance its adaptability and survival in varying environmental conditions. Understanding the genomic features of Pseudomonas donghuensis strain SVBP6 is crucial for appreciating its ecological roles and potential applications in biotechnology, particularly in areas such as agriculture and environmental management. The streamlined genomic structure may also facilitate further research into its metabolic capabilities and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas donghuensis
Strainstrain SVBP6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas donghuensis strain SVBP6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas donghuensis strain SVBP6 scaffold40.1, whole genome

Gene Summary

Adenine Count

1068088 bp

Thymine Count

1077131 bp

Guanine Count

1782955 bp

Cytosine Count

1772948 bp

Genome Length

5701342 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3156 domain-containing proteinCOO64_13655Not AvailablePositive2861523 - 286210721982.1
transcriptional regulator fearCOO64_13660Not AvailablePositive2862225 - 286316934521.0
bcr/cfla family drug resistance efflux transporterCOO64_13665Not AvailablePositive2863301 - 286452441875.6
tetr/acrr family transcriptional regulatorCOO64_13670Not AvailablePositive2864552 - 286513621673.9
duf861 domain-containing proteinCOO64_13675Not AvailableNegative2865219 - 286558413252.6
fad-binding oxidoreductaseCOO64_13680Not AvailableNegative2865619 - 286691747925.6
homoprotocatechuate degradation operon regulator hparCOO64_13685Not AvailablePositive2867082 - 286750416134.9
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolaseCOO64_13690Not AvailableNegative2867591 - 286839428181.0
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseCOO64_13695Not AvailableNegative2868405 - 286920829204.0
mfs transporterCOO64_13700Not AvailableNegative2869220 - 287052447009.2

Displaying genes 2821 – 2830 of 5259 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.