Pseudomonas donghuensis strain SVBP6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas donghuensis strain SVBP6 is characterized by having a single replicon, indicating a streamlined genomic organization. The strain is cataloged under the accession number NWCB00000000.1, which provides a reference point for genomic studies and comparisons within the Pseudomonas genus. As part of the Pseudomonas species, SVBP6 is likely to exhibit traits commonly associated with this group, such as metabolic versatility and the ability to thrive in diverse environments. Pseudomonas species are known for their ecological roles, often found in soil, water, and as plant-associated bacteria. They can contribute to nutrient cycling and have potential applications in bioremediation due to their ability to degrade various organic pollutants. The presence of a single replicon in Pseudomonas donghuensis strain SVBP6 may suggest a more efficient replication and maintenance of its genetic material, which could be advantageous in certain ecological niches. This trait could enhance its adaptability and survival in varying environmental conditions. Understanding the genomic features of Pseudomonas donghuensis strain SVBP6 is crucial for appreciating its ecological roles and potential applications in biotechnology, particularly in areas such as agriculture and environmental management. The streamlined genomic structure may also facilitate further research into its metabolic capabilities and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas donghuensis
Strainstrain SVBP6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas donghuensis strain SVBP6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas donghuensis strain SVBP6 scaffold40.1, whole genome

Gene Summary

Adenine Count

1068088 bp

Thymine Count

1077131 bp

Guanine Count

1782955 bp

Cytosine Count

1772948 bp

Genome Length

5701342 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
poly(3-hydroxyalkanoate) granule-associated protein phaiCOO64_13455Not AvailablePositive2818496 - 281891515288.5
poly(hydroxyalkanoate) granule-associated proteinCOO64_13460Not AvailablePositive2818926 - 281968725313.5
tetr family transcriptional regulatorCOO64_13465Not AvailableNegative2819734 - 282034823218.4
class ii poly(r)-hydroxyalkanoic acid synthaseCOO64_13470Not AvailableNegative2820362 - 282204462966.1
poly(3-hydroxyalkanoate) depolymeraseCOO64_13475Not AvailableNegative2822164 - 282301531438.6
class ii poly(r)-hydroxyalkanoic acid synthaseCOO64_13480Not AvailableNegative2823076 - 282475562544.6
duf971 domain-containing proteinCOO64_13485Not AvailableNegative2825105 - 282548213812.5
atp-dependent protease atpase subunit hsluCOO64_13490Not AvailableNegative2825575 - 282691249815.0
atp-dependent protease subunit hslvCOO64_13495Not AvailableNegative2826990 - 282752018841.6
dihydroorotaseCOO64_13500Not AvailableNegative2827705 - 282897644196.1

Displaying genes 2781 – 2790 of 5259 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.