Sphingopyxis sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. is characterized by its rod-shaped morphology and possesses a single replicon in its genomic structure. This classification places it within the broader context of the Sphingopyxis genus, which is known for its diverse metabolic capabilities and ecological significance. The genus Sphingopyxis is often associated with the degradation of various organic compounds, which suggests that members of this group may play a role in bioremediation processes. Due to their ability to metabolize complex environmental pollutants, these bacteria could be integral in maintaining ecological balance, particularly in contaminated habitats. The specific strain of Sphingopyxis sp. referenced by the accession NVXM00000000.1 provides a genomic basis for studying its biochemical pathways and potential applications in environmental microbiology. Understanding the genetic makeup and functional attributes of Sphingopyxis sp. could lead to insights into its role in nutrient cycling and organic matter decomposition in various ecosystems. Overall, the examination of such bacterial species enhances our knowledge of microbial diversity and their contributions to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp.

NVXM00000000.1

Gene Summary

Adenine Count

972220 bp

Thymine Count

966223 bp

Guanine Count

1234008 bp

Cytosine Count

1258921 bp

Genome Length

4431811 bp

Protein-coding Genes

3965 genes

Non-Coding Genes

144 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-phospho-l-lactate transferaseCOA41_19525Not AvailableNegative4123651 - 412457733021.8
coenzyme f420-0:l-glutamate ligaseCOA41_19530Not AvailableNegative4124574 - 412532925799.3
nadph-dependent f420 reductaseCOA41_19535Not AvailableNegative4125337 - 412598721897.5
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthaseCOA41_19540Not AvailableNegative4126003 - 412832184812.9
long-chain fatty acid--coa ligaseCOA41_19545Not AvailableNegative4128399 - 413000959558.1
2-hydroxy-6-oxo-2,4-heptadienoate hydrolaseCOA41_19550Not AvailableNegative4130036 - 413086930900.9
hypothetical proteinCOA41_19555Not AvailableNegative4130949 - 413150921452.4
benzoate 1,2-dioxygenase large subunitCOA41_19560Not AvailableNegative4131433 - 413279151158.1
short-chain dehydrogenaseCOA41_19565Not AvailableNegative4132889 - 413378231357.8
2,3-dihydroxybiphenyl 1,2-dioxygenaseCOA41_19570Not AvailableNegative4133739 - 413463233345.6

Displaying genes 3851 – 3860 of 4109 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.