Sphingopyxis sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. is characterized by its rod-shaped morphology and possesses a single replicon in its genomic structure. This classification places it within the broader context of the Sphingopyxis genus, which is known for its diverse metabolic capabilities and ecological significance. The genus Sphingopyxis is often associated with the degradation of various organic compounds, which suggests that members of this group may play a role in bioremediation processes. Due to their ability to metabolize complex environmental pollutants, these bacteria could be integral in maintaining ecological balance, particularly in contaminated habitats. The specific strain of Sphingopyxis sp. referenced by the accession NVXM00000000.1 provides a genomic basis for studying its biochemical pathways and potential applications in environmental microbiology. Understanding the genetic makeup and functional attributes of Sphingopyxis sp. could lead to insights into its role in nutrient cycling and organic matter decomposition in various ecosystems. Overall, the examination of such bacterial species enhances our knowledge of microbial diversity and their contributions to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingopyxis sp. isolate NORP11 Contig_source1382A_31922,

Gene Summary

Adenine Count

972220 bp

Thymine Count

966223 bp

Guanine Count

1234008 bp

Cytosine Count

1258921 bp

Genome Length

4431811 bp

Protein-coding Genes

3965 genes

Non-Coding Genes

144 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rlua family pseudouridine synthaseCOA41_13025Not AvailablePositive2769115 - 277006834329.5
rna polymerase sigma factor rpohCOA41_13030Not AvailablePositive2770144 - 277105534190.8
monofunctional biosynthetic peptidoglycan transglycosylaseCOA41_13035Not AvailablePositive2771137 - 277180524575.8
atp-dependent clp protease atp-binding subunit clpxCOA41_13040Not AvailableNegative2771942 - 277321345923.2
atp-dependent clp protease proteolytic subunitCOA41_13045Not AvailableNegative2773352 - 277397522869.6
atp-dependent clp protease proteolytic subunitCOA41_13050Not AvailablePositive2774220 - 277484022775.2
trigger factorCOA41_13055Not AvailableNegative2774947 - 277653058405.6
Trna-leuNot AvailableNot AvailablePositive2776589 - 2776673Not Available
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit bCOA41_13065Not AvailableNegative2776765 - 277825254698.8
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aCOA41_13070Not AvailableNegative2778255 - 277973951978.7

Displaying genes 2591 – 2600 of 4109 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.