Sphingopyxis sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. is characterized by its rod-shaped morphology and possesses a single replicon in its genomic structure. This classification places it within the broader context of the Sphingopyxis genus, which is known for its diverse metabolic capabilities and ecological significance. The genus Sphingopyxis is often associated with the degradation of various organic compounds, which suggests that members of this group may play a role in bioremediation processes. Due to their ability to metabolize complex environmental pollutants, these bacteria could be integral in maintaining ecological balance, particularly in contaminated habitats. The specific strain of Sphingopyxis sp. referenced by the accession NVXM00000000.1 provides a genomic basis for studying its biochemical pathways and potential applications in environmental microbiology. Understanding the genetic makeup and functional attributes of Sphingopyxis sp. could lead to insights into its role in nutrient cycling and organic matter decomposition in various ecosystems. Overall, the examination of such bacterial species enhances our knowledge of microbial diversity and their contributions to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Sphingopyxis sp. isolate NORP11 Contig_source1382A_31922,

Gene Summary

Adenine Count

972220 bp

Thymine Count

966223 bp

Guanine Count

1234008 bp

Cytosine Count

1258921 bp

Genome Length

4431811 bp

Protein-coding Genes

3965 genes

Non-Coding Genes

144 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l34COA41_07525Not AvailablePositive1604909 - 16050435117.5
ribonuclease p protein componentCOA41_07530Not AvailablePositive1605159 - 160550012750.8
membrane protein insertion efficiency factor yiddCOA41_07535Not AvailablePositive1605503 - 16057157955.81
membrane protein insertase yidcCOA41_07540Not AvailablePositive1605769 - 160762868852.4
yiha family ribosome biogenesis gtp-binding proteinCOA41_07545Not AvailablePositive1607625 - 160824522792.8
glutathione s-transferaseCOA41_07550Not AvailablePositive1608316 - 160898725327.1
succinyl-diaminopimelate desuccinylaseCOA41_07555Not AvailablePositive1608998 - 161012540297.3
dna mismatch repair protein mutsCOA41_07560Not AvailableNegative1610135 - 161069520484.7
hypothetical proteinCOA41_07565Not AvailableNegative1610698 - 161204748319.3
preprotein translocase subunit tim44COA41_07570Not AvailableNegative1612037 - 161267523479.3

Displaying genes 1611 – 1620 of 4109 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.