Escherichia coli strain KCJK3945

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK3945 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic, indicating its ability to grow in both aerobic and anaerobic conditions. This strain typically exists in pairs or singles and demonstrates mobility due to the presence of flagella. It is mesophilic, with an optimal growth temperature of 37°C. KCJK3945 is host-associated and exhibits a diverse range of biotic relationships, being free-living and associated with various hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and several other vertebrates and invertebrates, such as Apis mellifera (honeybees) and Solanum lycopersicum (tomatoes). This broad host range highlights the ecological versatility of the strain. The strain is known for its significant health effects in humans, where it is linked to numerous conditions such as urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and more severe complications like hemolytic uremic syndrome (HUS) and septicemia. Additionally, it can cause foodborne infections and contribute to conditions such as renal failure and colorectal cancer. The pathogenicity of E. coli strain KCJK3945 in humans underscores its potential public health impact, particularly in the context of food safety and infection control. Understanding its diverse host interactions and pathogenic mechanisms is crucial for developing strategies to mitigate the risks associated with its infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK3945

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK3945
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK3945

Gene Summary

Adenine Count

1350016 bp

Thymine Count

1350628 bp

Guanine Count

1359613 bp

Cytosine Count

1366917 bp

Genome Length

5427174 bp

Protein-coding Genes

5060 genes

Non-Coding Genes

372 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
colicin m resistance protein cbraA9819_21215Not AvailablePositive4096679 - 409774340055.3
hypothetical proteinA9819_21220Not AvailablePositive4097989 - 409864524021.7
sugar phosphatase yidaA9819_21225Not AvailableNegative4098689 - 409950129722.8
hypothetical proteinA9819_21230Not AvailableNegative4099616 - 410002314173.0
dna gyrase subunit bA9819_21235Not AvailableNegative4100254 - 410266889955.0
dna replication and repair protein recfA9819_21240Not AvailableNegative4102697 - 410377040516.4
dna polymerase iii subunit betaA9819_21245Not AvailableNegative4103770 - 410487040589.1
chromosomal replication initiator protein dnaaA9819_21250Not AvailableNegative4104875 - 410627852553.7
hypothetical proteinA9819_21255Not AvailableNegative4106572 - 41067727436.9
50s ribosomal protein l34A9819_21260Not AvailablePositive4106885 - 41070255380.74

Displaying genes 4081 – 4090 of 5432 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total