Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain KCJK3945 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1350016 bp
Thymine Count
1350628 bp
Guanine Count
1359613 bp
Cytosine Count
1366917 bp
Genome Length
5427174 bp
Protein-coding Genes
5060 genes
Non-Coding Genes
372 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | A9819_20955 | Not Available | Positive | 4038442 - 4038735 | 11065.4 |
| cesd/sycd/lcrh family type iii secretion system chaperone | A9819_20960 | Not Available | Positive | 4039037 - 4039534 | 19127.8 |
| type iii cell invasion protein sipb | A9819_20965 | Not Available | Positive | 4039783 - 4041564 | 64597.0 |
| hypothetical protein | A9819_20970 | Not Available | Positive | 4041577 - 4042707 | 41703.8 |
| type iii effector | A9819_20975 | Not Available | Positive | 4042751 - 4044100 | 50040.8 |
| transcriptional regulator hila | A9819_20980 | Not Available | Positive | 4044303 - 4046000 | 64081.2 |
| purine ribonucleoside efflux pump nepi | A9819_20990 | Not Available | Negative | 4056205 - 4057389 | 41520.2 |
| hypothetical protein | A9819_20995 | Not Available | Positive | 4057388 - 4057570 | 6835.31 |
| type ii toxin-antitoxin system rele/pare family toxin | A9819_21005 | Not Available | Positive | 4057616 - 4057975 | 13711.5 |
| transcriptional regulator | A9819_21010 | Not Available | Positive | 4057959 - 4058282 | 11625.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





