Sphingomonas lenta strain 1PNM-20

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas lenta strain 1PNM-20 is a rod-shaped bacterium characterized by the presence of flagella, which suggests it has motility capabilities. This strain is notable for its genomic simplicity, possessing a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NSLI00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The presence of flagella is significant as it enables the organism to navigate through its habitat, which could be crucial for survival in competitive microbial communities. From a biological or ecological perspective, the motility of Sphingomonas lenta strain 1PNM-20 may enhance its ability to colonize specific niches, interact with other microorganisms, and participate in biogeochemical processes. This can have implications for nutrient cycling and the microbial dynamics within its ecosystem. Understanding such traits is vital for exploring the potential roles of Sphingomonas lenta in environmental bioremediation or in symbiotic relationships with other organisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas lenta
Strainstrain 1PNM-20

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas lenta strain 1PNM-20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas lenta strain 1PNM-20 contig10, whole genome shotgun

Gene Summary

Adenine Count

567013 bp

Thymine Count

566666 bp

Guanine Count

1331670 bp

Cytosine Count

1292076 bp

Genome Length

3757425 bp

Protein-coding Genes

3508 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agmatine deiminaseCKY28_08330Not AvailablePositive1703725 - 170469934577.6
n-carbamoylputrescine amidaseCKY28_08335Not AvailablePositive1704696 - 170554431383.2
uracil-dna glycosylaseCKY28_08340Not AvailableNegative1705541 - 170623625117.9
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseCKY28_08345Not AvailablePositive1706352 - 170682817166.9
Trna-lysNot AvailableNot AvailablePositive1706845 - 1706920Not Available
hypothetical proteinCKY28_08355Not AvailableNegative1706963 - 170731912934.0
udp-glucose 4-epimerase galeCKY28_08360Not AvailableNegative1707419 - 170842035862.7
peptide-methionine (s)-s-oxide reductaseCKY28_08365Not AvailablePositive1708494 - 170903619803.1
threonylcarbamoyl-amp synthaseCKY28_08370Not AvailableNegative1709237 - 171016631675.1
acyl-coa dehydrogenaseCKY28_08375Not AvailablePositive1710216 - 171189559452.0

Displaying genes 1671 – 1680 of 3579 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.