Halovibrio salipaludis strain YL5-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Halovibrio

Description

Halovibrio salipaludis strain YL5-2 is characterized by having a single replicon, indicating a streamlined genomic structure typically associated with efficient replication and stability within its environment. The strain is cataloged under the accession number NSKD00000000.1, which provides a reference for further genetic and taxonomic studies. The specific traits of Halovibrio salipaludis suggest that it may be well-adapted to its ecological niche, likely involving saline environments given its genus designation. Members of the Halovibrio genus are known for their halophilic characteristics, often thriving in high-salinity conditions. This adaptability may confer ecological advantages in fluctuating environments where salinity levels can vary considerably. Understanding the genomic features and ecological adaptations of Halovibrio salipaludis strain YL5-2 can offer insights into its potential roles in biogeochemical cycles within saline ecosystems. The presence of a single replicon may enhance its capacity for rapid adaptation and survival in extreme conditions, which is crucial for maintaining microbial diversity and function in such habitats. The study of this strain could further elucidate the mechanisms that enable microbial life to persist in environments with high salinity, contributing to our broader understanding of microbial ecology and evolution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusHalovibrio
SpeciesHalovibrio salipaludis
Strainstrain YL5-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halovibrio salipaludis strain YL5-2 contig32, whole genome shotgun

Gene Summary

Adenine Count

669046 bp

Thymine Count

655437 bp

Guanine Count

1073398 bp

Cytosine Count

1097215 bp

Genome Length

3495096 bp

Protein-coding Genes

3235 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaCK501_04855Not AvailablePositive1002391 - 100344638925.2
trna guanosine(34) transglycosylase tgtCK501_04860Not AvailablePositive1003461 - 100456440715.8
preprotein translocase subunit yajcCK501_04865Not AvailablePositive1004564 - 100492012711.9
protein translocase subunit secdCK501_04870Not AvailablePositive1004948 - 100680166907.8
protein translocase subunit secfCK501_04875Not AvailablePositive1006812 - 100776834370.0
inositol monophosphataseCK501_04880Not AvailableNegative1007782 - 100858529528.1
trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmjCK501_04885Not AvailablePositive1008770 - 100956429255.8
serine o-acetyltransferaseCK501_04890Not AvailablePositive1009557 - 101036329706.4
fe-s cluster assembly transcriptional regulator iscrCK501_04895Not AvailablePositive1010424 - 101090917622.9
iscs subfamily cysteine desulfuraseCK501_04900Not AvailablePositive1010951 - 101212641531.4

Displaying genes 971 – 980 of 3290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.