Halovibrio salipaludis strain YL5-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Halovibrio

Description

Halovibrio salipaludis strain YL5-2 is characterized by having a single replicon, indicating a streamlined genomic structure typically associated with efficient replication and stability within its environment. The strain is cataloged under the accession number NSKD00000000.1, which provides a reference for further genetic and taxonomic studies. The specific traits of Halovibrio salipaludis suggest that it may be well-adapted to its ecological niche, likely involving saline environments given its genus designation. Members of the Halovibrio genus are known for their halophilic characteristics, often thriving in high-salinity conditions. This adaptability may confer ecological advantages in fluctuating environments where salinity levels can vary considerably. Understanding the genomic features and ecological adaptations of Halovibrio salipaludis strain YL5-2 can offer insights into its potential roles in biogeochemical cycles within saline ecosystems. The presence of a single replicon may enhance its capacity for rapid adaptation and survival in extreme conditions, which is crucial for maintaining microbial diversity and function in such habitats. The study of this strain could further elucidate the mechanisms that enable microbial life to persist in environments with high salinity, contributing to our broader understanding of microbial ecology and evolution.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusHalovibrio
SpeciesHalovibrio salipaludis
Strainstrain YL5-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halovibrio salipaludis strain YL5-2 contig32, whole genome shotgun

Gene Summary

Adenine Count

669046 bp

Thymine Count

655437 bp

Guanine Count

1073398 bp

Cytosine Count

1097215 bp

Genome Length

3495096 bp

Protein-coding Genes

3235 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysine 6-monooxygenaseCK501_00840Not AvailablePositive166042 - 16738249917.1
tonb-dependent siderophore receptorCK501_00845Not AvailablePositive167455 - 16965380830.8
fe(3+)-hydroxamate abc transporter permease fhubCK501_00850Not AvailableNegative169720 - 17169368320.1
iron-hydroxamate abc transporter substrate-binding proteinCK501_00855Not AvailableNegative171693 - 17261033814.8
abc transporterCK501_00860Not AvailableNegative172630 - 17340028190.3
siderophore ferric iron reductaseCK501_00865Not AvailableNegative173381 - 17424731453.0
anthranilate synthase component iCK501_00870Not AvailablePositive174479 - 17596054959.2
anthranilate/aminodeoxychorismate synthase component iiCK501_00875Not AvailablePositive175977 - 17657022036.4
anthranilate phosphoribosyltransferaseCK501_00880Not AvailablePositive176577 - 17761736882.4
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive177207 - 177566Not Available

Displaying genes 171 – 180 of 3290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.