Escherichia coli strain ECCTRPRTH03

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain ECCTRPRTH03 is a Gram-negative, rod-shaped bacterium categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain exhibits mobility due to the presence of flagella and typically arranges itself in pairs or singles. It is mesophilic, with an optimal growth temperature of 37°C. ECCTRPRTH03 is associated with various hosts, including Homo sapiens, Gallus gallus, Bos taurus, and several other vertebrates and invertebrates. This suggests a broad ecological adaptability and the ability to interact with diverse biological systems. The strain is free-living, indicating it can survive independently in the environment, yet it also has significant pathogenic potential in humans, as evidenced by its association with numerous health effects. These include urinary tract infections (UTIs), gastrointestinal infections, septicemia, and neonatal meningitis, among others. The strain is notable for its potential to cause severe clinical conditions such as hemolytic uremic syndrome (HUS) and peritonitis, highlighting its importance in public health and clinical microbiology. The extensive range of health effects it can induce illustrates the significant role of E. coli in both clinical settings and the broader ecosystem, particularly in relation to foodborne infections and animal health. This strain’s ability to impact multiple hosts and cause serious diseases underscores the need for ongoing surveillance and research to mitigate its public health implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain ECCTRPRTH03

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain ECCTRPRTH03
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_64, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5034 genes

Non-Coding Genes

300 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cellulose biosynthesis regulator yedqCI641_002465Not AvailableNegative494184 - 49587864306.5
hypothetical proteinCI641_002470Not AvailableNegative495839 - 4960337571.39
duf2158 domain-containing proteinCI641_002475Not AvailableNegative496116 - 4962986688.89
duf808 domain-containing proteinCI641_002480Not AvailableNegative496377 - 49729432116.7
drug/metabolite exporter yedaCI641_002485Not AvailablePositive497467 - 49838732196.0
very short patch repair endonucleaseCI641_002490Not AvailableNegative498376 - 49884618002.6
dna cytosine methyltransferaseCI641_002495Not AvailableNegative498827 - 50024553509.8
phosphohydrolaseCI641_002500Not AvailableNegative500312 - 50100725937.8
permeaseCI641_002505Not AvailableNegative501047 - 50141213838.9
porinCI641_002510Not AvailablePositive501979 - 50305239729.6

Displaying genes 751 – 760 of 5458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total