Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain ECCTRPRTH03 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
5034 genes
Non-Coding Genes
300 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein vgrg | CI641_016825 | Not Available | Positive | 3515078 - 3517297 | 80610.0 |
| duf1795 domain-containing protein | CI641_016830 | Not Available | Positive | 3517325 - 3517756 | 16373.8 |
| sugar-binding protein | CI641_016835 | Not Available | Positive | 3517787 - 3522298 | 167520.0 |
| hypothetical protein | CI641_016840 | Not Available | Positive | 3522458 - 3522841 | 15197.3 |
| isas1-like element isec1 family transposase | CI641_016845 | Not Available | Positive | 3523298 - 3524434 | 43130.9 |
| 2,5-diketo-d-gluconic acid reductase | CI641_016850 | Not Available | Positive | 3524412 - 3524615 | 7318.68 |
| lysr family transcriptional regulator | CI641_016855 | Not Available | Negative | 3524612 - 3525526 | 33752.8 |
| endonuclease/exonuclease/phosphatase family protein | CI641_016860 | Not Available | Positive | 3525767 - 3526567 | 29993.4 |
| methyltransferase domain-containing protein | CI641_016865 | Not Available | Positive | 3526645 - 3527415 | 28372.5 |
| murein transglycosylase d | CI641_016870 | Not Available | Negative | 3527463 - 3528821 | 49420.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





