Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain ECCTRPRTH03 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
5034 genes
Non-Coding Genes
300 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | CI641_007065 | Not Available | Positive | 1477120 - 1477611 | 18647.9 |
| type vi secretion system atpase tssh | CI641_007070 | Not Available | Positive | 1477802 - 1480447 | 97973.3 |
| type vi secretion system tip protein vgrg | CI641_007075 | Not Available | Positive | 1480459 - 1482831 | 87536.7 |
| duf4123 domain-containing protein | CI641_007080 | Not Available | Positive | 1482834 - 1483655 | 31547.4 |
| duf3304 domain-containing protein | CI641_007085 | Not Available | Positive | 1483699 - 1484253 | 20742.9 |
| duf3304 domain-containing protein | CI641_007090 | Not Available | Positive | 1484253 - 1485038 | 29730.4 |
| hypothetical protein | CI641_007095 | Not Available | Positive | 1485116 - 1487062 | 73723.4 |
| hypothetical protein | CI641_007100 | Not Available | Positive | 1487386 - 1487631 | 9717.36 |
| type vi secretion system tip protein vgrg | CI641_007105 | Not Available | Positive | 1487783 - 1490299 | 92774.8 |
| hypothetical protein | CI641_007110 | Not Available | Positive | 1490292 - 1491080 | 30334.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





